In this course problems from biological engineering are used to develop structured computer programming skills and explore the theory and practice of complex systems design and construction.
The official course Web site can be viewed at: BE.180 Biological Engineering Programming.

This course focuses on feedback control mechanisms that living organisms implement at the molecular level to execute their functions, with emphasis on techniques to design novel systems with prescribed behaviors. Students will learn how biological functions can be understood and designed using notions from feedback control.

This class is a project-based introduction to the engineering of synthetic biological systems. Throughout the term, students develop projects that are responsive to real-world problems of their choosing, and whose solutions depend on biological technologies. Lectures, discussions, and studio exercises will introduce (1) components and control of prokaryotic and eukaryotic behavior, (2) DNA synthesis, standards, and abstraction in biological engineering, and (3) issues of human practice, including biological safety; security; ownership, sharing, and innovation; and ethics. Enrollment preference is given to freshmen.
This subject was originally developed and first taught in Spring 2008 by Drew Endy and Natalie Kuldell. Many of Drew’s materials are used in this Spring 2009 version, and are included with his permission.
This OCW Web site is based on the OpenWetWare class Wiki, found at OpenWetWare: 20.020 (S09)

There are more microbes permanently living in our gut than there are cells in the human body. This rich community of bacteria, fungi and viruses, called the microbiome, plays a central role in human health and disease. Recent research has linked this passenger community to nutrition, circadian rhythms, infectious disease, inflammatory disease, cancer, diabetes, arthritis and even immune system and nervous system development. How can we analyze such a complex system? Can we exploit the microbiome to improve human health? Can interactions with microbes be harnessed for drug delivery?
In this course, we will learn to critically assess the primary scientific literature to find answers to these questions and learn to distinguish between correlation and causality. We will learn how mechanistic insights and emerging tools, such as synthetic biology and microfluidics, together are transforming microbiome research, and might lead to new types of therapeutics and drug delivery for improving human health.
This course is one of many Advanced Undergraduate Seminars offered by the Biology Department at MIT. These seminars are tailored for students with an interest in using primary research literature to discuss and learn about current biological research in a highly interactive setting. Many instructors of the Advanced Undergraduate Seminars are postdoctoral scientists with a strong interest in teaching.

A fun module for students to introduce them to synthetic biology. Includes a presentation and an activity in which students pair up to complete. Recommended to do this activity in-class offline. It takes about 1-1.5 hours to complete.

This is a seminar based on research literature. Papers covered are selected to illustrate important problems and approaches in the field of computational and systems biology, and provide students a framework from which to evaluate new developments.
The MIT Initiative in Computational and Systems Biology (CSBi) is a campus-wide research and education program that links biology, engineering, and computer science in a multidisciplinary approach to the systematic analysis and modeling of complex biological phenomena. This course is one of a series of core subjects offered through the CSB Ph.D. program, for students with an interest in interdisciplinary training and research in the area of computational and systems biology.