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DATUM for Health: Research data management training for health studies
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Abstract
Training materials. The DATUM for Health training programme covers both generic and discipline-specific issues, focusing on the management of qualitative, unstructured data, and is suitable for students at any stage of their PhD. It aims to provide students with the knowledge to manage their research data at every stage in the data lifecycle, from creation to final storage or destruction. They learn how to use their data more effectively and efficiently, how to store and destroy it securely, and how to make it available to a wider audience to increase its use, value and impact.

Subject:
Applied Science
Computer Science
Information Science
Material Type:
Activity/Lab
Module
Primary Source
Author:
Julie Mcleod
Date Added:
05/06/2022
DEBATE-statistical analysis plans for observational studies
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CC BY
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Background All clinical research benefits from transparency and validity. Transparency and validity of studies may increase by prospective registration of protocols and by publication of statistical analysis plans (SAPs) before data have been accessed to discern data-driven analyses from pre-planned analyses. Main message Like clinical trials, recommendations for SAPs for observational studies increase the transparency and validity of findings. We appraised the applicability of recently developed guidelines for the content of SAPs for clinical trials to SAPs for observational studies. Of the 32 items recommended for a SAP for a clinical trial, 30 items (94%) were identically applicable to a SAP for our observational study. Power estimations and adjustments for multiplicity are equally important in observational studies and clinical trials as both types of studies usually address multiple hypotheses. Only two clinical trial items (6%) regarding issues of randomisation and definition of adherence to the intervention did not seem applicable to observational studies. We suggest to include one new item specifically applicable to observational studies to be addressed in a SAP, describing how adjustment for possible confounders will be handled in the analyses. Conclusion With only few amendments, the guidelines for SAP of a clinical trial can be applied to a SAP for an observational study. We suggest SAPs should be equally required for observational studies and clinical trials to increase their transparency and validity.

Subject:
Applied Science
Health, Medicine and Nursing
Material Type:
Reading
Provider:
BMC Medical Research Methodology
Author:
Bart Hiemstra
Christian Gluud
Frederik Keus
Iwan C. C. van der Horst
Jørn Wetterslev
Date Added:
08/07/2020
Data Analysis: Visualization and Dashboard Design
Conditional Remix & Share Permitted
CC BY-NC-SA
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Struggling with data at work? Wasting valuable time working in multiple spreadsheets to gain an overview of your business? Find it hard to gain sharp insights from piles of data on your desktop?

If you are looking to enhance your efficiency in the office and improve your performance by making sense of data faster and smarter, then this advanced data analysis course is for you.

If you have already sharpened your spreadsheet skills in Data Analysis: Take It to the MAX(), this course will help you dig deeper. You will learn advanced techniques for robust data analysis in a business environment. This course covers the main tasks required from data analysts today, including importing, summarizing, interpreting, analyzing and visualizing data. It aims to equip you with the tools that will enable you to be an independent data analyst. Most techniques will be taught in Excel with add-ons and free tools available online. We encourage you to use your own data in this course but if not available, the course team can provide.

These course materials are part of an online course of TU Delft. Do you want to experience an active exchange of information between academic staff and students? Then join the community of online learners and enroll in this MOOC. This course is part of the Data Analysis XSeries.

Subject:
Applied Science
Business and Communication
Engineering
Material Type:
Full Course
Provider:
Delft University of Technology
Provider Set:
TU Delft OpenCourseWare
Author:
Dr. Felienne Hermans
Date Added:
08/01/2018
Data Analysis and Visualization in Python for Ecologists
Unrestricted Use
CC BY
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Python is a general purpose programming language that is useful for writing scripts to work effectively and reproducibly with data. This is an introduction to Python designed for participants with no programming experience. These lessons can be taught in one and a half days (~ 10 hours). They start with some basic information about Python syntax, the Jupyter notebook interface, and move through how to import CSV files, using the pandas package to work with data frames, how to calculate summary information from a data frame, and a brief introduction to plotting. The last lesson demonstrates how to work with databases directly from Python.

Subject:
Applied Science
Computer Science
Information Science
Mathematics
Measurement and Data
Material Type:
Module
Provider:
The Carpentries
Author:
Maxim Belkin
Tania Allard
Date Added:
03/20/2017
Data Analysis and Visualization in R for Ecologists
Unrestricted Use
CC BY
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Data Carpentry lesson from Ecology curriculum to learn how to analyse and visualise ecological data in R. Data Carpentry’s aim is to teach researchers basic concepts, skills, and tools for working with data so that they can get more done in less time, and with less pain. The lessons below were designed for those interested in working with ecology data in R. This is an introduction to R designed for participants with no programming experience. These lessons can be taught in a day (~ 6 hours). They start with some basic information about R syntax, the RStudio interface, and move through how to import CSV files, the structure of data frames, how to deal with factors, how to add/remove rows and columns, how to calculate summary statistics from a data frame, and a brief introduction to plotting. The last lesson demonstrates how to work with databases directly from R.

Subject:
Applied Science
Computer Science
Ecology
Information Science
Life Science
Mathematics
Measurement and Data
Material Type:
Module
Provider:
The Carpentries
Author:
Ankenbrand, Markus
Arindam Basu
Ashander, Jaime
Bahlai, Christie
Bailey, Alistair
Becker, Erin Alison
Bledsoe, Ellen
Boehm, Fred
Bolker, Ben
Bouquin, Daina
Burge, Olivia Rata
Burle, Marie-Helene
Carchedi, Nick
Chatzidimitriou, Kyriakos
Chiapello, Marco
Conrado, Ana Costa
Cortijo, Sandra
Cranston, Karen
Cuesta, Sergio Martínez
Culshaw-Maurer, Michael
Czapanskiy, Max
Daijiang Li
Dashnow, Harriet
Daskalova, Gergana
Deer, Lachlan
Direk, Kenan
Dunic, Jillian
Elahi, Robin
Fishman, Dmytro
Fouilloux, Anne
Fournier, Auriel
Gan, Emilia
Goswami, Shubhang
Guillou, Stéphane
Hancock, Stacey
Hardenberg, Achaz Von
Harrison, Paul
Hart, Ted
Herr, Joshua R.
Hertweck, Kate
Hodges, Toby
Hulshof, Catherine
Humburg, Peter
Jean, Martin
Johnson, Carolina
Johnson, Kayla
Johnston, Myfanwy
Jordan, Kari L
K. A. S. Mislan
Kaupp, Jake
Keane, Jonathan
Kerchner, Dan
Klinges, David
Koontz, Michael
Leinweber, Katrin
Lepore, Mauro Luciano
Li, Ye
Lijnzaad, Philip
Lotterhos, Katie
Mannheimer, Sara
Marwick, Ben
Michonneau, François
Millar, Justin
Moreno, Melissa
Najko Jahn
Obeng, Adam
Odom, Gabriel J.
Pauloo, Richard
Pawlik, Aleksandra Natalia
Pearse, Will
Peck, Kayla
Pederson, Steve
Peek, Ryan
Pletzer, Alex
Quinn, Danielle
Rajeg, Gede Primahadi Wijaya
Reiter, Taylor
Rodriguez-Sanchez, Francisco
Sandmann, Thomas
Seok, Brian
Sfn_brt
Shiklomanov, Alexey
Shivshankar Umashankar
Stachelek, Joseph
Strauss, Eli
Sumedh
Switzer, Callin
Tarkowski, Leszek
Tavares, Hugo
Teal, Tracy
Theobold, Allison
Tirok, Katrin
Tylén, Kristian
Vanichkina, Darya
Voter, Carolyn
Webster, Tara
Weisner, Michael
White, Ethan P
Wilson, Earle
Woo, Kara
Wright, April
Yanco, Scott
Ye, Hao
Date Added:
03/20/2017
Data Analysis and Visualization with Python for Social Scientists
Unrestricted Use
CC BY
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Python is a general purpose programming language that is useful for writing scripts to work effectively and reproducibly with data. This is an introduction to Python designed for participants with no programming experience. These lessons can be taught in a day (~ 6 hours). They start with some basic information about Python syntax, the Jupyter notebook interface, and move through how to import CSV files, using the pandas package to work with data frames, how to calculate summary information from a data frame, and a brief introduction to plotting. The last lesson demonstrates how to work with databases directly from Python.

Subject:
Applied Science
Computer Science
Information Science
Mathematics
Measurement and Data
Material Type:
Module
Provider:
The Carpentries
Author:
Geoffrey Boushey
Stephen Childs
Date Added:
08/07/2020
Data Analysis and Workflows
Unrestricted Use
Public Domain
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Understanding the types, processes, and frameworks of workflows and analyses is helpful for researchers seeking to understand more about research, how it was created, and what it may be used for. This lesson uses a subset of data analysis types to introduce reproducibility, iterative analysis, documentation, provenance and different types of processes. Described in more detail are the benefits of documenting and establishing informal (conceptual) and formal (executable) workflows.

Subject:
Applied Science
Education
Higher Education
Information Science
Material Type:
Lesson
Provider:
DataONE
Author:
DataONE Community Engagement & Outreach Working Group
Date Added:
11/21/2020
Data Carpentry
Unrestricted Use
CC BY
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Data Carpentry trains researchers in the core data skills for efficient, shareable, and reproducible research practices. We run accessible, inclusive training workshops; teach openly available, high-quality, domain-tailored lessons; and foster an active, inclusive, diverse instructor community that promotes and models reproducible research as a community norm.

Subject:
Applied Science
Life Science
Physical Science
Social Science
Material Type:
Full Course
Provider:
Data Carpentry Community
Author:
Data Carpentry Community
Date Added:
06/18/2020
Data Carpentry R for Genomics
Unrestricted Use
CC BY
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Data Carpentry's aim is to teach researchers basic concepts, skills, and tools for working more effectively with data. The lessons below were designed for those interested in working with Genomics data in R.

Subject:
Applied Science
Computer Science
Material Type:
Lesson
Provider:
NumFocus
Provider Set:
Data Carpentry Genomics Materials
Author:
Kate Hertweck
Ryan Williams
Susan McClatchey
Tracy Teal
Date Added:
03/28/2017
Data Carpentry for Biologists
Unrestricted Use
CC BY
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The Biology Semester-long Course was developed and piloted at the University of Florida in Fall 2015. Course materials include readings, lectures, exercises, and assignments that expand on the material presented at workshops focusing on SQL and R.

Subject:
Applied Science
Biology
Computer Science
Information Science
Life Science
Mathematics
Measurement and Data
Material Type:
Module
Provider:
The Carpentries
Author:
Ethan White
Zachary Brym
Date Added:
08/07/2020
Data Citation
Unrestricted Use
Public Domain
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Data citation is a key practice that supports the recognition of data creation as a primary research output rather than as a mere byproduct of research. Providing reliable access to research data should be a routine practice, similar to the practice of linking researchers to bibliographic references. After completing this lesson, participants should be able to define data citation and describe its benefits; to identify the roles of various actors in supporting data citation; to recognize common metadata elements and persistent data locators and describe the process for obtaining one, and to summarize best practices for supporting data citation.

Subject:
Applied Science
Education
Higher Education
Information Science
Material Type:
Lesson
Provider:
DataONE
Author:
DataONE Community Engagement & Outreach Working Group
Date Added:
11/21/2020
Data Citations with FRED (Page One Economics)
Read the Fine Print
Educational Use
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FRED® (Federal Reserve Economic Data) provides access to a wide range of data from multiple sources. Describing the source of data used in a presentation, written report, or research project with a citation makes that work more thorough and easier to replicate. This article describes the elements of a good data citation for new data users and serves as a reference for advanced data users.

Subject:
Economics
Social Science
Material Type:
Activity/Lab
Lecture
Lesson
Lesson Plan
Reading
Provider:
Federal Reserve Bank of St. Louis
Provider Set:
Page One Economics
Date Added:
01/08/2021
Data Cleaning with OpenRefine for Ecologists
Unrestricted Use
CC BY
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A part of the data workflow is preparing the data for analysis. Some of this involves data cleaning, where errors in the data are identified and corrected or formatting made consistent. This step must be taken with the same care and attention to reproducibility as the analysis. OpenRefine (formerly Google Refine) is a powerful free and open source tool for working with messy data: cleaning it and transforming it from one format into another. This lesson will teach you to use OpenRefine to effectively clean and format data and automatically track any changes that you make. Many people comment that this tool saves them literally months of work trying to make these edits by hand.

Subject:
Applied Science
Computer Science
Information Science
Mathematics
Measurement and Data
Material Type:
Module
Provider:
The Carpentries
Author:
Cam Macdonell
Deborah Paul
Phillip Doehle
Rachel Lombardi
Date Added:
03/20/2017
Data Curation Primers – Data Curation Network
Unrestricted Use
CC BY
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Data curation primers are peer-reviewed, living documents to provide practical and concise guides on curating a specific data type or format, or addressing a particular challenge in data curation work. All the primers are developed by Data Curation Network (DCN) which is a seed funding project from the Alfred P Sloan Foundation. The target audiences of primers are data curators and/or data librarians. To date, DCN has published more than 25 primers on database, Excel, netCDF, NVivo, R, SPSS, etc.

Subject:
Applied Science
Information Science
Material Type:
Primary Source
Author:
Data Curation Network
Date Added:
12/17/2021
Data Discovery Lessons
Conditional Remix & Share Permitted
CC BY-NC
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The lessons posted on this site were designed to engage students with real-world data relevant to content taught in middle school and high school science courses, and to foster an understanding of ways in which they might gather organize, analyze and interpret the data in order to draw scientifically valid inferences, interpretations and conclusions. Most of the labs use computer-based technology of spreadsheet programs or the Python programming interface. The Python lessons guide students in computational thinking to create simple programs to manipulate data. The lessons also provide students (and teachers) with instructions and guidance in the use of these technologies. Teacher and Student worksheets, as well as any supporting files, are linked to from links at the top of each lesson webpage as well as from the downloads page ("downloads" link on the scrolling menu to the left).

Material Type:
Activity/Lab
Lesson Plan
Author:
Mark Wenning
Date Added:
06/11/2011
Data-Driven Learning Personas
Only Sharing Permitted
CC BY-ND
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Learn how instructional designers use data to inform the creation of a Learning Persona. Learning Personas help determine the needs of the training and help ...

Subject:
Business and Communication
Career and Technical Education
Communication
Education
Mathematics
Measurement and Data
Material Type:
Lesson
Author:
LAPU
Date Added:
03/02/2023
Data Entry and Manipulation
Unrestricted Use
Public Domain
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When entering data, common goals include creating data sets that are valid, have gone through an established process to ensure quality, are organized, and reusable. This lesson outlines best practices for creating data files. It will detail options for data entry and integration, and provide examples of processes used for data cleaning, organization and manipulation.

Subject:
Applied Science
Education
Higher Education
Information Science
Material Type:
Lesson
Provider:
DataONE
Author:
DataONE Community Engagement & Outreach Working Group
Date Added:
11/21/2020