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PDB-101: PDB and Data Archiving Curriculum
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This curriculum introduces best practices recommendations for developing and managing a data pipeline for a curated public archive of biological experimental data, leveraging the extensive experience of the Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) team. The curriculum has the following Learning Objectives:

Knowledge:
Identify the key stakeholders of a data archive and recognize their roles
Understand how to develop a data dictionary with the appropriate level of granularity
Recognize what is involved in designing and maintaining an archive for shared data

Skills:
Develop requirements for information to include in a data archive
Construct a deposition and annotation workflow based on a data dictionary
Design and implement a small deposition system for data capture

Provided exercises guide students step-by-step to design, create, and query their own biological MySQL-based database

Development of this resource was supported by National Institutes of Health National Library of Medicine R25LM012286 as part of the BD2K Initiative.

Subject:
Applied Science
Computing and Information
Life Science
Material Type:
Data Set
Homework/Assignment
Lecture
Author:
Brian Hudson
Catherine L Lawson
Ezra Peisach
Helen M Berman
Jasmine Young
John Westbrook
Jose Duarte
Margaret Gabanyi
Peter Rose
Shuchismita Dutta
Stephen Burley
Date Added:
09/12/2018
PRÁTICAS EM CIÊNCIAS MATEMÁTICAS PARA A SENSIBILIZAÇÃO AMBIENTAL  DE ALUNOS DO ENSINO FUNDAMENTAL
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CC BY-NC-ND
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O material didático intitulado Planilha Eco-Controle Financeiro na Escola, foi elaborado com a
participação e envolvimento dos alunos da turma, para assim servir de apoio para os devidos cálculos matemáticos no decorrer da evolução da pesquisa. O presente trabalho buscou envolver as Ciências Matemáticas para a sensibilização ambiental de alunos do Ensino Fundamental. Com o objetivo de estimular a Economia Solidária por meio de uma moeda social (Eco Moeda), nomeada como DIC. Assim estimulou-se o letramento matemático, a solidariedade e a consciência ecológica.

Subject:
Business and Communication
Ecology
Economics
Finance
Life Science
Social Science
Material Type:
Data Set
Lecture Notes
Teaching/Learning Strategy
Author:
Antoni Zabala
Félix Guattari
Lev Vygotsky
Paul Singer
Paulo Freire
Date Added:
07/11/2024
Panorama dos Recursos Hídricos em Diferentes Contextos
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CC BY-NC
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O caderno "Panorama dos Recursos Hídricos em Diferentes Contextos", constitui um dos produtos técnicos educacionais da dissertação intitulada "Percepções e mapeamento de conflitos socioambientais relativos à água nos limites da bacia hidrográfica do Paraguaçu. Este produto foi elaborado tomando como referência a "Enquete operária de Karl Max", apresentamos, portanto, um questionário cujo objetivo é conduzir o leitor a uma reflexão crítica a respeito da sua realidade local e sua relação com os recursos hídricos.

Subject:
Applied Science
Environmental Science
Material Type:
Case Study
Data Set
Reading
Author:
Alane Kelly Nunes de Oliveira
Luiz Antônio Ferraro Junior
Taíse Bomfim de Jesus
Date Added:
03/16/2022
Paper Model of Comet ISON's Orbit
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This paper model shows the orbit of Comet ISON (late 2013) with respect to the innermost planets of the solar system. After reading background information about comets - how they form and where they come from - students cut out and tape together the pieces of the model provided to show its orbital pathway (a single page of parts that can be assembled using just scissors and adhesive). Links are provided to related classroom activities and additional resources.

Subject:
Physical Science
Space Science
Material Type:
Activity/Lab
Data Set
Provider:
NASA
Provider Set:
NASA Wavelength
Date Added:
11/05/2014
Patterns of Ocean Energy Balance
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Oceans play a significant role in determining and moderating the effects of energy imbalances. Students will begin this lesson by working with temperature data to reinforce the importance of protocols, practice computing statistical measures of data and interpreting their significance. The lesson continues with investigations into daily and annual energy cycles. Using a sea surface environment visualizer, students then identify patterns of sea surface current and temperature data. Note that this is lesson five of five on the Ocean Motion website. Each lesson investigates ocean surface circulation using satellite and model data and can be done independently. See Related URL's for links to the Ocean Motion Website that provide science background information, data resources, teacher material, student guides and a lesson matrix.

Subject:
Oceanography
Physical Science
Material Type:
Activity/Lab
Data Set
Lesson Plan
Provider:
NASA
Provider Set:
NASA Wavelength
Date Added:
11/05/2014
Pearls
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This Web site takes an in-depth look at pearls. It contains information on how both natural and imitation pearls are created, the freshwater and marine mollusks that are the source of pearls, and examines how pearls became important symbols of wealth, status, and religious beliefs, as well as how mother-of-pearl shells had an even higher value for some cultures.

Subject:
Anthropology
Life Science
Social Science
Material Type:
Data Set
Provider:
American Museum of Natural History
Provider Set:
American Museum of Natural History
Date Added:
10/15/2014
Percents & the U.S. Electoral College
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CC BY-SA
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This is a lesson that could be used in mathematics, social studies, RtII, and/or MTSS.

The lesson involves studying and understanding percents which is beneficial in mathematics and learning about key social studies (civics) terms like majority and plurality.

Case studies are used here, specifically controversial Electoral College results in U.S. Presidential Elections.

Subject:
Arts and Humanities
Education
History
Mathematics
Social Science
Material Type:
Activity/Lab
Case Study
Data Set
Diagram/Illustration
Lesson
Lesson Plan
Primary Source
Date Added:
03/15/2018
Personal Dictionary Template
Unrestricted Use
CC BY
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This page is meant to be printed out and distributed to students as a blank template to record new words and phrases. Ideally, the papers are hole-punched, and students can create a alphabetized Personal Dictionary throughout the year that demonstrates their learning. These are half-sheets, so some printing, chopping, and hole punching is required.

Subject:
Arts and Humanities
English Language Arts
Literature
Reading Foundation Skills
Material Type:
Activity/Lab
Data Set
Date Added:
11/25/2018
Pescara VS Palermo Betting Tips  Italian Serie A
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CC BY-SA
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both teams already relegated to Serie B and this game is not important. Both teams is with huge problems in defense this season and with worst performance in defense from all clubs in Serie A, so I expect a lot of goal here. First meeting ended 1-1, but now an over is expected.

Subject:
Arts and Humanities
Material Type:
Data Set
Textbook
Date Added:
05/22/2017
Petra: Lost City of Stone
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This Web site, created to complement the Petra: Lost City of Stone exhibit, looks at this once flourishing city in the heart of the ancient Near East. Although the exhibit is now closed, the web site contains a wealth of information about Petra.

Subject:
Anthropology
Archaeology
Social Science
Material Type:
Data Set
Provider:
American Museum of Natural History
Provider Set:
American Museum of Natural History
Date Added:
10/15/2014
Petrography and Petrogenesis of a Mid-Ocean Ridge Lava Suite
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CC BY-NC-SA
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This is a laboratory-style investigation wherein students examine the petrography and major-element geochemistry of 6 samples of mid-ocean ridge basalt and related differentiated lavas recovered from the Cleft segment of southern Juan de Fuca Ridge, a medium spreading-rate MOR in the northeast Pacific Ocean. Lava types range from basalt to dacite.

After some initial background information on basalts, the MOR environment, and the study area students investigate four thin sections, beginning with typical basalts and ending with a dacite. They are led through a series of directed questions that help them gain familiarity with commonly occurring minerals and textures in mid-ocean ridge lavas. Questions direct students toward the interpretation of quench-related textural features and crystallization sequence, as well as a few other textural observations and petrographic techniques. After proceeding through the initial four thin sections and associated questions student are then asked to undertake "full thin-section descriptions" of the remaining two samples.Â

After investigating the thin-sections and determining a possible crystallization sequence from the petrographic data gathered (plagioclase followed by olivine followed by augitic clinopyroxene followed by pigeonite), students examine a P-T phase diagram to constrain possible pressures of formation. Discovering that crystallization pressures were low (less than ~ 0.75 GPa) students then examine a phase diagram of the olivine-plagioclase-augite-quartz system (olivine-quartz-augite ternary, projected from the plane of plagioclase saturation) [Walker, 1979]. Students draw 2 possible liquid lines of descent (LLD) onto the diagram, and then use their petrographic observations to qualitatively plot the samples along that LLD, determining a relative sequence of chemical evolution for the suite of samples. Lastly, given those determinations, student graph the major element data for the lava suite to infer paths of chemical evolution and the effects of fractional crystallization (possibly coupled with magma mixing).

(Note: this resource was added to OER Commons as part of a batch upload of over 2,200 records. If you notice an issue with the quality of the metadata, please let us know by using the 'report' button and we will flag it for consideration.)

Subject:
Biology
Chemistry
Life Science
Mathematics
Measurement and Data
Physical Science
Physics
Statistics and Probability
Material Type:
Activity/Lab
Data Set
Diagram/Illustration
Lesson Plan
Provider:
Science Education Resource Center (SERC) at Carleton College
Provider Set:
Teach the Earth
Author:
Matthew Smith
Mike Perfit
Date Added:
11/03/2020
Phenylketonuira
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In this activity, students are assigned different alleles of the gene for phenylalanine hydroxylase to research using OMIM (Online Mendelian Inheritance in Man). They are then asked to both explain and illustrate how this mutation may cause the disease phenylketonuria (PKU).

Subject:
Genetics
Life Science
Material Type:
Activity/Lab
Assessment
Data Set
Homework/Assignment
Provider:
Science Education Resource Center (SERC) at Carleton College
Provider Set:
Starting Point (SERC)
Author:
Scott Cooper
Date Added:
08/28/2012
Photon Upconversion
Unrestricted Use
Public Domain
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This material consists of general introduction of the phenomenon "photon upconversion". I have attached a file for better understanding. There are also references for further studies. 

Subject:
Chemistry
Material Type:
Case Study
Data Set
Author:
Kiran Hiremath
Date Added:
03/29/2023
Physical and Chemical Variations Along the Central American Volcanic Arc
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The Central American volcanic arc displays large arc-parallel variations in chemical composition that yield important clues concerning the complex origin of magmas in subduction zones. In this exercise, students use data compiled for the NSF MARGINS program to compare heights, volumes, and whole-rock compositions of 39 Quaternary volcanic centers along the Central American arc, together with crustal thicknesses, to assess the possible sources of the magmas and the petrologic processes that have modified them prior to eruption.

(Note: this resource was added to OER Commons as part of a batch upload of over 2,200 records. If you notice an issue with the quality of the metadata, please let us know by using the 'report' button and we will flag it for consideration.)

Subject:
Biology
Chemistry
Geoscience
Life Science
Physical Science
Material Type:
Activity/Lab
Data Set
Lesson Plan
Provider:
Science Education Resource Center (SERC) at Carleton College
Provider Set:
Teach the Earth
Author:
Kent Ratajeski
Date Added:
11/15/2016
Physical and Chemical Variations Along the Central American Volcanic Arc
Conditional Remix & Share Permitted
CC BY-NC-SA
Rating
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The Central American volcanic arc displays large arc-parallel variations in chemical composition that yield important clues concerning the complex origin of magmas in subduction zones. In this exercise, students use data compiled for the NSF MARGINS program to compare heights, volumes, and whole-rock compositions of 41 Quaternary volcanic centers along the Central American arc, together with crustal thicknesses, to assess the possible sources of the magmas and the petrologic processes that have modified them prior to eruption.

(Note: this resource was added to OER Commons as part of a batch upload of over 2,200 records. If you notice an issue with the quality of the metadata, please let us know by using the 'report' button and we will flag it for consideration.)

Subject:
Biology
Life Science
Material Type:
Activity/Lab
Data Set
Lesson Plan
Provider:
Science Education Resource Center (SERC) at Carleton College
Provider Set:
Teach the Earth
Author:
Kent Ratajeski
Date Added:
12/10/2020
Planets of the Solar System
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CC BY-NC
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This resource gives information about our solar system which is made up of the sun, planets and all the amazing objects that travel around it. Information about the plant sizes, distances in the solar system and the size and shape of orbits is also explained. The universe is filled with billions of star systems. And the star system we are most familiar with is our own.

Subject:
Astronomy
Physical Geography
Physical Science
Material Type:
Data Set
Diagram/Illustration
Lesson
Module
Reading
Provider:
CK-12 Foundation
Author:
Dana Desonie
Date Added:
08/29/2019
Plant Inventory
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This article, part of Biodiversity Counts, reports on the process of doing a plant inventory. The article discusses how scientists begin by marking out the plot, using colored flagging and permanent marker, why you may need to divide a plot into smaller subplots if the plants you're inventorying are smaller than trees, and some of the difficulties scientists face in the field when they're working in particularly dense areas.

Subject:
Botany
Life Science
Material Type:
Data Set
Provider:
American Museum of Natural History
Provider Set:
American Museum of Natural History
Date Added:
10/15/2014