All resources in Researchers

Introduction to web scraping

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Web scraping is the process of extracting data from websites. Some data that is available on the web is presented in a format that makes it easier to collect and use it, for example in the form of downloadable comma-separated values (CSV) datasets that can then be imported in a spreadsheet or loaded into a data analysis script. Often however, even though it is publicly available, data is not readily available for reuse. For example it can be contained in a PDF, or a table on a website, or spread across multiple web pages. There are a variety of ways to scrape a website to extract information for reuse. In its simplest form, this can be achieved by copying and pasting snippets from a web page, but this can be unpractical if there is a large amount of data to be extracted, or if it spread over a large number of pages. Instead, specialized tools and techniques can be used to automate this process, by defining what sites to visit, what information to look for, and whether data extraction should stop once the end of a page has been reached, or whether to follow hyperlinks and repeat the process recursively. Automating web scraping also allows to define whether the process should be run at regular intervals and capture changes in the data.

Material Type: Module

Authors: Belinda Weaver, Joshua Dull, Thomas Guignard

The What, Why, and How of Preregistration

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More researchers are preregistering their studies as a way to combat publication bias and improve the credibility of research findings. Preregistration is at its core designed to distinguish between confirmatory and exploratory results. Both are important to the progress of science, but when they are conflated, problems arise. In this webinar, we discuss the What, Why, and How of preregistration and what it means for the future of science. Visit cos.io/prereg for additional resources.

Material Type: Lecture

Author: Center for Open Science

Optimizing Research Collaboration

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In this webinar, we demonstrate the OSF tools available for contributors, labs, centers, and institutions that support stronger collaborations. The demo includes useful practices like: contributor management, the OSF wiki as an electronic lab notebook, using OSF to manage online courses and syllabi, and more. Finally, we look at how OSF Institutions can provide discovery and intelligence gathering infrastructure so that you can focus on conducting and supporting exceptional research. The Center for Open Science’s ongoing mission is to provide community and technical resources to support your commitments to rigorous, transparent research practices. Visit cos.io/institutions to learn more.

Material Type: Lecture

Author: Center for Open Science

How to Use OSF as an Electronic Lab Notebook

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This webinar outlines how to use the free Open Science Framework (OSF) as an Electronic Lab Notebook for personal work or private collaborations. Fundamental features we cover include how to record daily activity, how to store images or arbitrary data files, how to invite collaborators, how to view old versions of files, and how to connect all this usage to more complex structures that support the full work of a lab across multiple projects and experiments.

Material Type: Lecture

Author: Center for Open Science

Workflow for Awarding Badges

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Badges are a great way to signal that a journal values transparent research practices. Readers see the papers that have underlying data or methods available, colleagues see that norms are changing within a community and have ample opportunities to emulate better practices, and authors get recognition for taking a step into new techniques. In this webinar, Professor Stephen Lindsay of University of Victoria discusses the workflow of a badging program, eligibility for badge issuance, and the pitfalls to avoid in launching a badging program. Visit cos.io/badges to learn more.

Material Type: Lecture

Author: Center for Open Science

Meeting the Requirements of Funders Around Open Science: Open Resources and Processes for Education

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Expectations by funders for transparent and reproducible methods are on the rise. This session covers expectations for preregistration, data sharing, and open access results of three key funders of education research including the Institute of Education Sciences, the National Science Foundation, and Arnold Ventures. Presenters cover practical resources for meeting these requirements such as the Registry for Efficacy and Effectiveness Studies (REES), the Open Science Framework (OSF), and EdArXiv. Presenters: Jessaca Spybrook, Western Michigan University Bryan Cook, University of Virginia David Mellor, Center for Open Science

Material Type: Lecture

Author: Center for Open Science

Being a Reviewer or Editor for Registered Reports

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Experienced Registered Reports editors and reviewers come together to discuss the format and best practices for handling submissions. The panelists also share insights into what editors are looking for from reviewers as well as practical guidelines for writing a Registered Report. ABOUT THE PANELISTS: Chris Chambers | Chris is a professor of cognitive neuroscience at Cardiff University, Chair of the Registered Reports Committee supported by the Center for Open Science, and one of the founders of Registered Reports. He has helped establish the Registered Reports format for over a dozen journals. Anastasia Kiyonaga | Anastasia is a cognitive neuroscientist who uses converging behavioral, brain stimulation, and neuroimaging methods to probe memory and attention processes. She is currently a postdoctoral researcher with Mark D'Esposito in the Helen Wills Neuroscience Institute at the University of California, Berkeley. Before coming to Berkeley, she received her Ph.D. with Tobias Egner in the Duke Center for Cognitive Neuroscience. She will be an Assistant Professor in the Department of Cognitive Science at UC San Diego starting January, 2020. Jason Scimeca | Jason is a cognitive neuroscientist at UC Berkeley. His research investigates the neural systems that support high-level cognitive processes such as executive function, working memory, and the flexible control of behavior. He completed his Ph.D. at Brown University with David Badre and is currently a postdoctoral researcher in Mark D'Esposito's Cognitive Neuroscience Lab. Moderated by David Mellor, Director of Policy Initiatives for the Center for Open Science.

Material Type: Lecture

Author: Center for Open Science

An Introduction to Registered Reports for the Research Funder Community

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In this webinar, Doctors David Mellor (Center for Open Science) and Stavroula Kousta (Nature Human Behavior) discuss the Registered Reports publishing workflow and the benefits it may bring to funders of research. Dr. Mellor details the workflow and what it is intended to do, and Dr. Kousta discusses the lessons learned at Nature Human Behavior from their efforts to implement Registered Reports as a journal.

Material Type: Lecture

Author: Center for Open Science

Preregistration: Improve Research Rigor, Reduce Bias

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In this webinar Professor Brian Nosek, Executive Director of the Center for Open Science (https://cos.io), outlines the practice of Preregistration and how it can aid in increasing the rigor and reproducibility of research. The webinar is co-hosted by the Health Research Alliance, a collaborative member organization of nonprofit research funders. Slides available at: https://osf.io/9m6tx/

Material Type: Lecture

Author: Center for Open Science

Open Science in Latin America

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Note: This webinar was presented in Spanish. The slides presented during this webinar can be found here:https://osf.io/6qnse/ The slides presented during this seminar can be found here: https://osf.io/6qnse/ Este seminario web se centrará en el estado de la ciencia abierta en América Latina, desde los esfuerzos de los investigadores individuales para abrir sus flujos de trabajo, herramientas para ayudar a los investigadores a ser abiertos y nuevas redes e iniciativas prometedoras en ciencia abierta. Ricardo Hartley (@ametodico) es profesor de metodología de la investigación de la Universidad Central de Chile, investigador en biología de la reproducción y en comunicación - valoración del conocimiento. Organizador de las OpenCon Santiago 2016 y 2017 y embajador COS. Erin McKiernan es profesora del Departamento de Física, Programa de Física Biomédica de la Universidad Nacional Autónoma de México. También es la fundadora del Why Open Research? proyecto, un sitio educativo para que los investigadores aprendan cómo compartir su trabajo, financiado en parte por la Fundación Shuttleworth. Fernan Federici Noe es profesor asistente e investigador de la Universidad Católica de Chile y fellow internacional del OpenPlant Synthetic Biology Center, University of Cambridge. Fernan es miembro del Global For Open Science Hardware (GOSH) y TECNOx (www.tecnox.org).

Material Type: Lecture

Author: Center for Open Science

OSF In The Lab: Organizing related projects with Links, Forks, and Templates

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Files for this webinar are available at: https://osf.io/ewhvq/ This webinar focuses on how to use the Open Science Framework (OSF) to tie together and organize multiple projects. We look at example structures appropriate for organizing classroom projects, a line of research, or a whole lab's activity. We discuss the OSF's capabilities for using projects as templates, linking projects, and forking projects as well as some considerations for using each of those capabilities when designing a structure for your own project. The OSF is a free, open source web application built to help researchers manage their workflows. The OSF is part collaboration tool, part version control software, and part data archive. The OSF connects to popular tools researchers already use, like Dropbox, Box, Github and Mendeley, to streamline workflows and increase efficiency.

Material Type: Lecture

Author: Center for Open Science

OSF101

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This webinar walks you through the basics of creating an OSF project, structuring it to fit your research needs, adding collaborators, and tying your favorite online tools into your project structure. OSF is a free, open source web application built by the Center for Open Science, a non-profit dedicated to improving the alignment between scientific values and scientific practices. OSF is part collaboration tool, part version control software, and part data archive. It is designed to connect to popular tools researchers already use, like Dropbox, Box, Github, and Mendeley, to streamline workflows and increase efficiency.

Material Type: Lecture

Author: Center for Open Science

Connecting Research Tools to the Open Science Framework (OSF)

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This webinar (recorded Sept. 27, 2017) introduces how to connect other services as add-ons to projects on the Open Science Framework (OSF; https://osf.io). Connecting services to your OSF projects via add-ons enables you to pull together the different parts of your research efforts without having to switch away from tools and workflows you wish to continue using. The OSF is a free, open source web application built to help researchers manage their workflows. The OSF is part collaboration tool, part version control software, and part data archive. The OSF connects to popular tools researchers already use, like Dropbox, Box, Github and Mendeley, to streamline workflows and increase efficiency.

Material Type: Lecture

Author: Center for Open Science

Introduction to Preprints

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This is a recording of a 45 minute introductory webinar on preprints. With our guest speaker Philip Cohen, we’ll cover what preprints/postprints are, the benefits of preprints, and address some common concerns researcher may have. We’ll show how to determine whether you can post preprints/postprints, and also demonstrate how to use OSF preprints (https://osf.io/preprints/) to share preprints. The OSF is the flagship product of the Center for Open Science, a non-profit technology start-up dedicated to improving the alignment between scientific values and scientific practices. Learn more at cos.io and osf.io, or email contact@cos.io.

Material Type: Lecture

Author: Center for Open Science

Version control with the OSF

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This webinar will introduce the concept of version control and the version control features that are built into the Open Science Framework (OSF; https://osf.io). The OSF is a free, open source web application built to help researchers manage their workflows. The OSF is part collaboration tool, part version control software, and part data archive. The OSF connects to popular tools researchers already use, like Dropbox, Box, Github and Mendeley, to streamline workflows and increase efficiency. This webinar will discuss how keeping track of the different file versions is important for efficient reproducible research practices, how version control works on the OSF, and how researchers can view and download previous versions of files.

Material Type: Lecture

Author: Center for Open Science

Licensing your research

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Join us for a 30 minute guest webinar by Brandon Butler, Director of Information Policy at the University of Virginia. This webinar will introduce questions to think about when picking a license for your research. You can signal which license you pick using the License Picker on the Open Science Framework (OSF; https://osf.io). The OSF is a free, open source web application built to help researchers manage their workflows. The OSF is part collaboration tool, part version control software, and part data archive. The OSF connects to popular tools researchers already use, like Dropbox, Box, Github, Mendeley, and now is integrated with JASP, to streamline workflows and increase efficiency.

Material Type: Lecture

Author: Center for Open Science

OSF in the Classroom

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This webinar will introduce how to use the Open Science Framework (OSF; https://osf.io) in a Classroom. The OSF is a free, open source web application built to help researchers manage their workflows. The OSF is part collaboration tool, part version control software, and part data archive. The OSF connects to popular tools researchers already use, like Dropbox, Box, Github and Mendeley, to streamline workflows and increase efficiency. This webinar will discuss how to introduce reproducible research practices to students, show ways of tracking student activity, and introduce the use of Templates and Forks on the OSF to allow students to easily make new class projects. The OSF is the flagship product of the Center for Open Science, a non-profit technology start-up dedicated to improving the alignment between scientific values and scientific practices. Learn more at cos.io and osf.io, or email contact@cos.io.

Material Type: Lecture

Author: Center for Open Science

Statistics with JASP and the Open Science Framework

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This webinar will introduce the integration of JASP Statistical Software (https://jasp-stats.org/) with the Open Science Framework (OSF; https://osf.io). The OSF is a free, open source web application built to help researchers manage their workflows. The OSF is part collaboration tool, part version control software, and part data archive. The OSF connects to popular tools researchers already use, like Dropbox, Box, Github, Mendeley, and now is integrated with JASP, to streamline workflows and increase efficiency.

Material Type: Lecture

Author: Center for Open Science